- Runci PJ, JJ Dooley. 2005. European Union Energy R&D Programs. Abstract.
- Kinzey B, MA Wise, JJ Dooley. 1998. Fuel Cells: A Competitive Market Tool for Carbon Reductions. Abstract.
- Eike D, JJ Dooley, EL Malone, W Valdez. 2001. Issues in Knowledge Discovery and Data Visualization for Large Federal Basic Science Research Portfolios. Abstract.
- Niefer M, JJ Dooley. 1998. The Determinants of Privately Funded Industrial Energy R&D: Evidence from 1973-1994.
- Dooley JJ, JA Edmonds, MA Wise. 1998. The Role of Carbon Capture & Sequestration in a Long-Term Technology Strategy of Atmospheric Stabilization.
- Dooley JJ. 1998. US National Investments in Energy R&D: 1974-1996. Abstract.
- Dahowski R, JJ Dooley. 2004. "Carbon Management Strategies for US Electricity Generation Capacity: a Vintage-based approach." Energy 29(9-10):1589-1598. Abstract.
- Dooley JJ, PJ Runci. 2000. "Developing Nations, Energy R&D, and the Provision of a Planetary Public Good: A Long-term Strategy for Addressing Climate Change." Journal of Environment and Development 9(3):215-229. Abstract.
- Dooley JJ, H Kerch. 2000. "Evolving Research Misconduct Policies and Their Significance for Physical Scientists." Science and Engineering Ethics 6(1):109-121. Abstract.
- Edmonds JA, JF Clarke, JJ Dooley, SH Kim, SJ Smith. 2004. "Modeling Greenhouse Gas Energy Technology Responses to Climate Change." Energy 29(9-10 (Special Issue)):1529-1536. Abstract.
- Wise MA, JJ Dooley, RT Dahowski, CL Davidson. 2007. "Modelling the impacts of climate policy on the deployment of carbon dioxide capture and geologic storage across electric power regions in the United States." International Journal of Greenhouse Gas Control 1(2):261-270.
- McGrail BP, HT Schaef, AM Ho, Y Chien, JJ Dooley, CL Davidson. 2006. "Potential for Carbon Dioxide Sequestration in Flood Basalts." Journal of Geophysical Research Solid Earth 111(B12):B12201. Abstract.
- Edmonds JA, JF Clarke, JJ Dooley, SH Kim, SJ Smith. 2004. "Stabilization of CO2 in a B2 World: Insights on The Roles of Carbon Capture and Disposal, Hydrogen, and Transportation Technologies." Energy Economics 26(4):517-537. Abstract.
- Dooley JJ, JA Edmonds, MA Wise. 1999. "The Role of Carbon Capture & Sequestration in a Long-term Technology Strategy of Atmospheric Stabilization." Abstract.
- Dooley JJ. 1998. "Unintended Consequences: Energy R&D in Deregulated Market." Energy Policy Volume 26, No. 7(June 1998):pp. 547-555.
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